NEWS

ebdbNet 1.2.7-1.2.8

Define USE_FC_LEN_T in the C source code and include Rconfig.h (to correspond to code produced by compiler gfortran >= 7)
Pass character length(s) from C to Fortran by defining FCONE and including it in the F77_CALL (https://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Fortran-character-strings)
Convert package to use registration (https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Writing-portable-packages) wth new init.c file

Fixed small typo in CITATION file, updated imports in NAMESPACE, updated webpage

Fixed small bug in dataFormat and plotting functions. Many thanks to Slemain Bassim for pointing out these bugs!
Update dependencies to replace igraph0 with igraph.

Dependencies to the igraph package were switched over to the compatability version igraph0.
Fixed bug in R code and bug in C code (line 2478) that caused memory crashes when the number of inputs was greater than the number of genes. Many thanks to A. Baeza for pointing out this bug!
Small changes made to plot.ebdbNet function to allow variable names to be graphed directly and to clarify presentation of results.

Author and maintainer contact information were updated.
Citation information was added, as well as a NAMESPACE file.
Creation of S3 class 'ebdbNet'.
sumFunc and fdbkFunc have become an internal functions (.sumFunc and .fdbkFunc) with documentation moved to the ebdbn-internal documentation page.
The function sensitivity has been renamed calcSensSpec, and the function simFunc has been renamed simulateVAR.
The zCutoff function has been folded into the ebdbn function, and users may now calculate adjacency matrices corresponding to arbitrary significance levels (not just 95%, 99%, and 99.9%).
The visualize function has been replaced with plot.ebdbNet, and the format of this function has changed slightly. In particular, we make use of the igraph function (which ebdbNet now depends on); this function allows either interactive or static plotting.

Author and maintainer contact information were updated.
References to the "Rgraphviz" package in the visualize function have been removed, as this package has been removed from the CRAN repository. In addition, Rgraphviz was removed from the Suggests list for packages in the DESCRIPTION file of ebdbNet.

The licence was changed from "GNU" to "GNU GPL 3 or later".
Functions data.format and visualize were added to format longitudinal data and graph results, respectively.
The Rgraphviz library was added to the list of suggested packages.
Some parts of the documentation were updated.
Small bugs in the C source code were fixed.
Code was adjusted to allow the incorporation of arbitrary driving inputs in addition to feedback from previous time points.